3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
UAAC*GA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OGG_115 not in the Motif Atlas
Geometric match to IL_1U9S_005
Geometric discrepancy: 0.3716
The information below is about IL_1U9S_005
Detailed Annotation
Minor groove platform, major groove intercalation
Broad Annotation
Minor groove platform, major groove intercalation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

6OGG|1|3|U|70
6OGG|1|3|A|71
6OGG|1|3|A|72
6OGG|1|3|C|73
*
6OGG|1|3|G|97
6OGG|1|3|A|98

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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