3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GAAGGG*CAUUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OGG_130 not in the Motif Atlas
Geometric match to IL_5J7L_023
Geometric discrepancy: 0.3786
The information below is about IL_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_70801.1
Basepair signature
cWW-cWW-L-R-tWW-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

6OGG|1|3|G|450
6OGG|1|3|A|451
6OGG|1|3|A|452
6OGG|1|3|G|453
6OGG|1|3|G|454
6OGG|1|3|G|455
*
6OGG|1|3|C|477
6OGG|1|3|A|478
6OGG|1|3|U|479
6OGG|1|3|U|480
6OGG|1|3|G|481
6OGG|1|3|A|482
6OGG|1|3|C|483

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain U
30S ribosomal protein S16

Coloring options:


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