IL_6OGG_130

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGG_130 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.3786

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6OGG|1|3|G|450
6OGG|1|3|A|451
6OGG|1|3|A|452
6OGG|1|3|G|453
6OGG|1|3|G|454
6OGG|1|3|G|455
*
6OGG|1|3|C|477
6OGG|1|3|A|478
6OGG|1|3|U|479
6OGG|1|3|U|480
6OGG|1|3|G|481
6OGG|1|3|A|482
6OGG|1|3|C|483

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S16