IL_6OGI_005

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_005 not in the Motif Atlas

Homologous match to IL_5J7L_249

Geometric discrepancy: 0.1623

The information below is about IL_5J7L_249

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6OGI|1|1|C|183
6OGI|1|1|C|184
*
6OGI|1|1|G|212
6OGI|1|1|A|213
6OGI|1|1|G|214

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34