IL_6OGI_016

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6OGI|1|1|G|801, 6OGI|1|1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1362

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6OGI|1|1|G|674
6OGI|1|1|A|675
6OGI|1|1|A|676
6OGI|1|1|A|677
6OGI|1|1|C|678
*
6OGI|1|1|G|799
6OGI|1|1|A|800
6OGI|1|1|G|801
6OGI|1|1|A|802
6OGI|1|1|U|803
6OGI|1|1|A|804
6OGI|1|1|G|805
6OGI|1|1|C|806

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15