IL_6OGI_034

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_034 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.1082

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6OGI|1|1|U|1004
6OGI|1|1|C|1005
6OGI|1|1|C|1006
6OGI|1|1|C|1007
6OGI|1|1|A|1008
6OGI|1|1|A|1009
6OGI|1|1|A|1010
6OGI|1|1|G|1011
*
6OGI|1|1|C|1150
6OGI|1|1|A|1151

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L13

Chain q

50S ribosomal protein L20