IL_6OGI_079

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAA*UACUC

Length

8 nucleotides

Bulged bases

6OGI|1|1|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_079 not in the Motif Atlas

Geometric match to IL_7Y2B_001

Geometric discrepancy: 0.3106

The information below is about IL_7Y2B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6OGI|1|1|G|2069
6OGI|1|1|A|2070
6OGI|1|1|A|2071
*
6OGI|1|1|U|2438
6OGI|1|1|A|2439
6OGI|1|1|C|2440
6OGI|1|1|U|2441
6OGI|1|1|C|2442

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4