IL_6OGI_105

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

6OGI|1|1|A|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_105 not in the Motif Atlas

Homologous match to IL_7RQB_108

Geometric discrepancy: 0.119

The information below is about IL_7RQB_108

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6OGI|1|1|G|2838
6OGI|1|1|G|2839
*
6OGI|1|1|U|2878
6OGI|1|1|A|2879
6OGI|1|1|C|2880

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17