IL_6OGI_107

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_107 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.1421

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6OGI|1|1|U|2847
6OGI|1|1|G|2848
6OGI|1|1|U|2849
6OGI|1|1|A|2850
6OGI|1|1|A|2851
6OGI|1|1|G|2852
*
6OGI|1|1|U|2865
6OGI|1|1|U|2866
6OGI|1|1|G|2867
6OGI|1|1|A|2868
6OGI|1|1|G|2869

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19