IL_6OGI_143
3D structure
- PDB id
- 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGC*GCGU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OGI_143 not in the Motif Atlas
- Geometric match to IL_4EYA_010
- Geometric discrepancy: 0.3298
- The information below is about IL_4EYA_010
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_51479.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
6OGI|1|3|G|836
6OGI|1|3|U|837
6OGI|1|3|G|838
6OGI|1|3|C|839
*
6OGI|1|3|G|847
6OGI|1|3|C|848
6OGI|1|3|G|849
6OGI|1|3|U|850
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain W
- 30S ribosomal protein S18
Coloring options: