IL_6OGI_152
3D structure
- PDB id
- 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGUC*GUCAA
- Length
- 9 nucleotides
- Bulged bases
- 6OGI|1|3|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OGI_152 not in the Motif Atlas
- Geometric match to IL_1L9A_005
- Geometric discrepancy: 0.3544
- The information below is about IL_1L9A_005
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6OGI|1|3|U|1060
6OGI|1|3|G|1061
6OGI|1|3|U|1062
6OGI|1|3|C|1063
*
6OGI|1|3|G|1193
6OGI|1|3|U|1194
6OGI|1|3|C|1195
6OGI|1|3|A|1196
6OGI|1|3|A|1197
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 4
- mRNA
- Chain H
- 30S ribosomal protein S3
- Chain J
- 30S ribosomal protein S5
- Chain N
- 30S ribosomal protein S9
- Chain O
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
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