IL_6OGI_176
3D structure
- PDB id
- 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGAACC*GGUACUCC
- Length
- 15 nucleotides
- Bulged bases
- 6OGI|1|1|U|2068, 6OGI|1|1|A|2439
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OGI_176 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3465
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
6OGI|1|1|G|2067
6OGI|1|1|U|2068
6OGI|1|1|G|2069
6OGI|1|1|A|2070
6OGI|1|1|A|2071
6OGI|1|1|C|2072
6OGI|1|1|C|2073
*
6OGI|1|1|G|2436
6OGI|1|1|G|2437
6OGI|1|1|U|2438
6OGI|1|1|A|2439
6OGI|1|1|C|2440
6OGI|1|1|U|2441
6OGI|1|1|C|2442
6OGI|1|1|C|2443
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain b
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
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