IL_6OGI_194
3D structure
- PDB id
- 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGG*CACAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OGI_194 not in the Motif Atlas
- Geometric match to IL_1L9A_005
- Geometric discrepancy: 0.3657
- The information below is about IL_1L9A_005
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6OGI|1|3|G|951
6OGI|1|3|U|952
6OGI|1|3|G|953
6OGI|1|3|G|954
*
6OGI|1|3|C|1226
6OGI|1|3|A|1227
6OGI|1|3|C|1228
6OGI|1|3|A|1229
6OGI|1|3|C|1230
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain N
- 30S ribosomal protein S9
- Chain R
- 30S ribosomal protein S13
- Chain X
- 30S ribosomal protein S19
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