IL_6OIG_023

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_023 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.1836

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6OIG|1|5|G|725
6OIG|1|5|G|726
6OIG|1|5|G|727
6OIG|1|5|G|728
*
6OIG|1|5|U|741
6OIG|1|5|G|742
6OIG|1|5|C|743
6OIG|1|5|A|744
6OIG|1|5|C|745

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L18-A

Chain b

60S ribosomal protein L29