IL_6OIG_040

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUUA*UUCUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_040 not in the Motif Atlas

Homologous match to IL_8C3A_044

Geometric discrepancy: 0.28

The information below is about IL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6OIG|1|5|G|1005
6OIG|1|5|A|1006
6OIG|1|5|U|1007
6OIG|1|5|U|1008
6OIG|1|5|A|1009
*
6OIG|1|5|U|1041
6OIG|1|5|U|1042
6OIG|1|5|C|1043
6OIG|1|5|U|1044
6OIG|1|5|C|1045

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L10