IL_6OIG_050
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6OIG|1|5|C|1196, 6OIG|1|5|C|1201, 6OIG|1|5|A|1302, 6OIG|1|5|U|1305
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OIG_050 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.2456
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6OIG|1|5|G|1194
6OIG|1|5|A|1195
6OIG|1|5|C|1196
6OIG|1|5|A|1197
6OIG|1|5|C|1198
6OIG|1|5|C|1199
6OIG|1|5|A|1200
6OIG|1|5|C|1201
6OIG|1|5|A|1202
6OIG|1|5|A|1203
6OIG|1|5|A|1204
6OIG|1|5|A|1205
*
6OIG|1|5|U|1299
6OIG|1|5|G|1300
6OIG|1|5|A|1301
6OIG|1|5|A|1302
6OIG|1|5|A|1303
6OIG|1|5|A|1304
6OIG|1|5|U|1305
6OIG|1|5|G|1306
6OIG|1|5|G|1307
6OIG|1|5|A|1308
6OIG|1|5|U|1309
6OIG|1|5|G|1310
6OIG|1|5|G|1311
6OIG|1|5|C|1312
6OIG|1|5|G|1313
6OIG|1|5|C|1314
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 60S ribosomal protein L3
- Chain F
- 60S ribosomal protein L7-A
- Chain I
- 60S ribosomal protein L10
- Chain O
- 60S ribosomal protein L16-A
- Chain m
- Ubiquitin-60S ribosomal protein L40
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