IL_6OIG_056

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

6OIG|1|5|G|1429

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_056 not in the Motif Atlas

Homologous match to IL_8C3A_061

Geometric discrepancy: 0.1915

The information below is about IL_8C3A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

6OIG|1|5|C|1376
6OIG|1|5|G|1377
6OIG|1|5|U|1378
*
6OIG|1|5|A|1428
6OIG|1|5|G|1429
6OIG|1|5|U|1430
6OIG|1|5|G|1431

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain a

60S ribosomal protein L28

Chain e

60S ribosomal protein L32