IL_6OIG_060

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_060 not in the Motif Atlas

Geometric match to IL_1NBS_007

Geometric discrepancy: 0.2633

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6OIG|1|5|G|1444
6OIG|1|5|U|1445
6OIG|1|5|A|1446
6OIG|1|5|G|1447
6OIG|1|5|U|1448
6OIG|1|5|A|1449
6OIG|1|5|G|1450
*
6OIG|1|5|C|2354
6OIG|1|5|G|2355
6OIG|1|5|A|2356
6OIG|1|5|A|2357
6OIG|1|5|A|2358
6OIG|1|5|C|2359

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L17-A