IL_6OIG_072
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUAAC*GGAAGA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OIG_072 not in the Motif Atlas
- Homologous match to IL_8C3A_077
- Geometric discrepancy: 0.2113
- The information below is about IL_8C3A_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69313.1
- Basepair signature
- cWW-tWH-tHH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6OIG|1|5|U|1694
6OIG|1|5|U|1695
6OIG|1|5|A|1696
6OIG|1|5|A|1697
6OIG|1|5|C|1698
*
6OIG|1|5|G|1747
6OIG|1|5|G|1748
6OIG|1|5|A|1749
6OIG|1|5|A|1750
6OIG|1|5|G|1751
6OIG|1|5|A|1752
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain g
- 60S ribosomal protein L34-A
- Chain k
- 60S ribosomal protein L38
Coloring options: