IL_6OIG_073

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_073 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.229

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6OIG|1|5|U|1702
6OIG|1|5|U|1703
6OIG|1|5|A|1704
6OIG|1|5|U|1705
6OIG|1|5|C|1706
6OIG|1|5|A|1707
*
6OIG|1|5|U|1737
6OIG|1|5|C|1738
6OIG|1|5|U|1739
6OIG|1|5|U|1740
6OIG|1|5|A|1741
6OIG|1|5|U|1742
6OIG|1|5|G|1743

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain g

60S ribosomal protein L34-A