IL_6OIG_082

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6OIG|1|5|U|2159, 6OIG|1|5|U|2175, 6OIG|1|5|C|2179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_082 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.2012

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6OIG|1|5|C|2156
6OIG|1|5|G|2157
6OIG|1|5|A|2158
6OIG|1|5|U|2159
6OIG|1|5|G|2160
6OIG|1|5|G|2161
*
6OIG|1|5|U|2173
6OIG|1|5|G|2174
6OIG|1|5|U|2175
6OIG|1|5|U|2176
6OIG|1|5|G|2177
6OIG|1|5|A|2178
6OIG|1|5|C|2179
6OIG|1|5|G|2180

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L43-A