IL_6OIG_087

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_087 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.241

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6OIG|1|5|U|2211
6OIG|1|5|C|2212
6OIG|1|5|A|2213
6OIG|1|5|A|2214
6OIG|1|5|A|2215
6OIG|1|5|G|2216
6OIG|1|5|U|2217
*
6OIG|1|5|A|2228
6OIG|1|5|A|2229
6OIG|1|5|C|2230
6OIG|1|5|C|2231
6OIG|1|5|A|2232
6OIG|1|5|A|2233
6OIG|1|5|G|2234

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain i

60S ribosomal protein L36-A