IL_6OIG_101

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGCU*GAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_101 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.3365

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6OIG|1|5|G|2823
6OIG|1|5|G|2824
6OIG|1|5|C|2825
6OIG|1|5|U|2826
*
6OIG|1|5|G|2863
6OIG|1|5|A|2864
6OIG|1|5|U|2865
6OIG|1|5|U|2866
6OIG|1|5|C|2867

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain I

60S ribosomal protein L10

Chain b

60S ribosomal protein L29