IL_6OIG_105

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6OIG|1|5|G|2945, 6OIG|1|5|A|2946

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_105 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.162

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6OIG|1|5|C|2879
6OIG|1|5|U|2880
6OIG|1|5|C|2881
*
6OIG|1|5|G|2943
6OIG|1|5|U|2944
6OIG|1|5|G|2945
6OIG|1|5|A|2946
6OIG|1|5|G|2947

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L23-A