IL_6OIG_139

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACCGAGUAG*CGAAACU

Length

16 nucleotides

Bulged bases

6OIG|1|7|C|73

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_139 not in the Motif Atlas

Homologous match to IL_5TBW_377

Geometric discrepancy: 0.2136

The information below is about IL_5TBW_377

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6OIG|1|7|A|72
6OIG|1|7|C|73
6OIG|1|7|C|74
6OIG|1|7|G|75
6OIG|1|7|A|76
6OIG|1|7|G|77
6OIG|1|7|U|78
6OIG|1|7|A|79
6OIG|1|7|G|80
*
6OIG|1|7|C|100
6OIG|1|7|G|101
6OIG|1|7|A|102
6OIG|1|7|A|103
6OIG|1|7|A|104
6OIG|1|7|C|105
6OIG|1|7|U|106

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain F

60S ribosomal protein L7-A

Chain S

60S ribosomal protein L20-A