IL_6OIG_159

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUAU*AUUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_159 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3532

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6OIG|1|5|A|3167
6OIG|1|5|A|3168
6OIG|1|5|U|3169
6OIG|1|5|A|3170
6OIG|1|5|U|3171
*
6OIG|1|5|A|3279
6OIG|1|5|U|3280
6OIG|1|5|U|3281
6OIG|1|5|U|3282
6OIG|1|5|U|3283

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain f

60S ribosomal protein L33-A