IL_6OIG_168

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACAC*GCGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_168 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3185

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6OIG|1|5|A|3163
6OIG|1|5|C|3164
6OIG|1|5|A|3165
6OIG|1|5|C|3166
*
6OIG|1|5|G|3284
6OIG|1|5|C|3285
6OIG|1|5|G|3286
6OIG|1|5|U|3287

Current chains

Chain 5

25S ribosomal RNA

Nearby chains