IL_6OJ2_034

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_034 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0942

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6OJ2|1|QA|G|887
6OJ2|1|QA|G|888
6OJ2|1|QA|A|889
6OJ2|1|QA|G|890
6OJ2|1|QA|U|891
6OJ2|1|QA|A|892
6OJ2|1|QA|C|893
6OJ2|1|QA|G|894
*
6OJ2|1|QA|U|905
6OJ2|1|QA|G|906
6OJ2|1|QA|A|907
6OJ2|1|QA|A|908
6OJ2|1|QA|A|909
6OJ2|1|QA|C|910

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QQ

30S ribosomal protein S17