3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_034 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0942
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

6OJ2|1|QA|G|887
6OJ2|1|QA|G|888
6OJ2|1|QA|A|889
6OJ2|1|QA|G|890
6OJ2|1|QA|U|891
6OJ2|1|QA|A|892
6OJ2|1|QA|C|893
6OJ2|1|QA|G|894
*
6OJ2|1|QA|U|905
6OJ2|1|QA|G|906
6OJ2|1|QA|A|907
6OJ2|1|QA|A|908
6OJ2|1|QA|A|909
6OJ2|1|QA|C|910

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QL
30S ribosomal protein S12
Chain QQ
30S ribosomal protein S17

Coloring options:


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