IL_6OJ2_132
3D structure
- PDB id
- 6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 6OJ2|1|RA|A|1938, 6OJ2|1|RA|U|1944, 6OJ2|1|RA|U|1963
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OJ2_132 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1284
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
6OJ2|1|RA|C|1934
6OJ2|1|RA|G|1935
6OJ2|1|RA|A|1936
6OJ2|1|RA|A|1937
6OJ2|1|RA|A|1938
6OJ2|1|RA|U|1939
6OJ2|1|RA|U|1940
6OJ2|1|RA|C|1941
6OJ2|1|RA|C|1942
6OJ2|1|RA|U|1943
6OJ2|1|RA|U|1944
6OJ2|1|RA|G|1945
*
6OJ2|1|RA|C|1961
6OJ2|1|RA|C|1962
6OJ2|1|RA|U|1963
6OJ2|1|RA|G|1964
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QY
- Transfer RNA; tRNA
- Chain RD
- 50S ribosomal protein L2
Coloring options: