3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAAAUUCCUUG*CCUG
Length
16 nucleotides
Bulged bases
6OJ2|1|RA|A|1938, 6OJ2|1|RA|U|1944, 6OJ2|1|RA|U|1963
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OJ2_132 not in the Motif Atlas
Geometric match to IL_4WF9_077
Geometric discrepancy: 0.1284
The information below is about IL_4WF9_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42218.2
Basepair signature
cWW-L-R-cHW-cWW-L-L-L-R-L
Number of instances in this motif group
5

Unit IDs

6OJ2|1|RA|C|1934
6OJ2|1|RA|G|1935
6OJ2|1|RA|A|1936
6OJ2|1|RA|A|1937
6OJ2|1|RA|A|1938
6OJ2|1|RA|U|1939
6OJ2|1|RA|U|1940
6OJ2|1|RA|C|1941
6OJ2|1|RA|C|1942
6OJ2|1|RA|U|1943
6OJ2|1|RA|U|1944
6OJ2|1|RA|G|1945
*
6OJ2|1|RA|C|1961
6OJ2|1|RA|C|1962
6OJ2|1|RA|U|1963
6OJ2|1|RA|G|1964

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain QY
Transfer RNA; tRNA
Chain RD
50S ribosomal protein L2

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