IL_6OJ2_142

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

6OJ2|1|RA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OJ2_142 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.487

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6OJ2|1|RA|C|2129
6OJ2|1|RA|U|2130
6OJ2|1|RA|G|2131
6OJ2|1|RA|U|2132
6OJ2|1|RA|G|2133
6OJ2|1|RA|A|2134
6OJ2|1|RA|A|2135
6OJ2|1|RA|C|2136
*
6OJ2|1|RA|G|2155
6OJ2|1|RA|G|2156
6OJ2|1|RA|G|2157
6OJ2|1|RA|A|2158
6OJ2|1|RA|G|2159

Current chains

Chain RA

23S rRNA

Nearby chains