IL_6OKK_008

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

6OKK|1|A|A|116, 6OKK|1|A|G|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OKK_008 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.2015

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6OKK|1|A|U|115
6OKK|1|A|A|116
6OKK|1|A|G|117
6OKK|1|A|U|118
*
6OKK|1|A|A|306
6OKK|1|A|G|307

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain L

40S ribosomal protein S8

Chain V

40S ribosomal protein S11