IL_6OKK_014
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAUCAG*CUAUGACG
- Length
- 14 nucleotides
- Bulged bases
- 6OKK|1|A|U|319, 6OKK|1|A|U|357
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_014 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1541
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6OKK|1|A|U|317
6OKK|1|A|A|318
6OKK|1|A|U|319
6OKK|1|A|C|320
6OKK|1|A|A|321
6OKK|1|A|G|322
*
6OKK|1|A|C|354
6OKK|1|A|U|355
6OKK|1|A|A|356
6OKK|1|A|U|357
6OKK|1|A|G|358
6OKK|1|A|A|359
6OKK|1|A|C|360
6OKK|1|A|G|361
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain L
- 40S ribosomal protein S8
- Chain Q
- 40S ribosomal protein S23
- Chain V
- 40S ribosomal protein S11
Coloring options: