IL_6OKK_020
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAAUU*AGAG
- Length
- 10 nucleotides
- Bulged bases
- 6OKK|1|A|G|465
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_020 not in the Motif Atlas
- Homologous match to IL_4V88_408
- Geometric discrepancy: 0.0951
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6OKK|1|A|C|449
6OKK|1|A|C|450
6OKK|1|A|A|451
6OKK|1|A|A|452
6OKK|1|A|U|453
6OKK|1|A|U|454
*
6OKK|1|A|A|464
6OKK|1|A|G|465
6OKK|1|A|A|466
6OKK|1|A|G|467
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S9
- Chain F
- 40S ribosomal protein S4
- Chain a
- 40S ribosomal protein S24
Coloring options: