IL_6OKK_024
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6OKK|1|A|A|586, 6OKK|1|A|U|588, 6OKK|1|A|U|589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_024 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1081
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6OKK|1|A|G|569
6OKK|1|A|U|570
6OKK|1|A|G|571
6OKK|1|A|C|572
6OKK|1|A|C|573
6OKK|1|A|A|574
6OKK|1|A|G|575
*
6OKK|1|A|C|582
6OKK|1|A|G|583
6OKK|1|A|G|584
6OKK|1|A|U|585
6OKK|1|A|A|586
6OKK|1|A|A|587
6OKK|1|A|U|588
6OKK|1|A|U|589
6OKK|1|A|C|590
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain Q
- 40S ribosomal protein S23
- Chain f
- 40S ribosomal protein S30
Coloring options: