IL_6OKK_025
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 6OKK|1|A|A|626
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_025 not in the Motif Atlas
- Homologous match to IL_4V88_416
- Geometric discrepancy: 0.1186
- The information below is about IL_4V88_416
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.3
- Basepair signature
- cWW-L-cWW-R-L-R
- Number of instances in this motif group
- 5
Unit IDs
6OKK|1|A|G|623
6OKK|1|A|U|624
6OKK|1|A|U|625
6OKK|1|A|A|626
6OKK|1|A|A|627
6OKK|1|A|A|628
6OKK|1|A|A|629
*
6OKK|1|A|U|1205
6OKK|1|A|C|1206
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein S23
- Chain c
- 40S ribosomal protein S26
Coloring options: