IL_6OKK_041
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_041 not in the Motif Atlas
- Homologous match to IL_4V88_432
- Geometric discrepancy: 0.1273
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6OKK|1|A|G|954
6OKK|1|A|U|955
6OKK|1|A|A|956
6OKK|1|A|U|957
*
6OKK|1|A|A|993
6OKK|1|A|G|994
6OKK|1|A|A|995
6OKK|1|A|C|996
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S3a
- Chain P
- 40S ribosomal protein S11
- Chain c
- 40S ribosomal protein S26
Coloring options: