IL_6OKK_044

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAG*CGUAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OKK_044 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.17

The information below is about IL_4V88_436

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6OKK|1|A|U|1059
6OKK|1|A|G|1060
6OKK|1|A|A|1061
6OKK|1|A|A|1062
6OKK|1|A|G|1063
*
6OKK|1|A|C|1079
6OKK|1|A|G|1080
6OKK|1|A|U|1081
6OKK|1|A|A|1082
6OKK|1|A|A|1083

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S11

Chain c

40S ribosomal protein S26