IL_6OKK_050
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6OKK|1|A|C|1259, 6OKK|1|A|C|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OKK_050 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.127
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6OKK|1|A|A|1258
6OKK|1|A|C|1259
6OKK|1|A|C|1260
6OKK|1|A|A|1261
*
6OKK|1|A|U|1914
6OKK|1|A|C|1915
6OKK|1|A|C|1916
6OKK|1|A|C|1917
6OKK|1|A|U|1918
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S5
- Chain M
- 40S ribosomal protein S16
- Chain N
- 40S ribosomal protein S20e
- Chain e
- 40S ribosomal protein S28e
- Chain g
- Transfer RNA; tRNA
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