IL_6OLE_056

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLE_056 not in the Motif Atlas

Geometric match to IL_1L9A_007

Geometric discrepancy: 0.3363

The information below is about IL_1L9A_007

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6OLE|1|S2|C|879
6OLE|1|S2|G|880
6OLE|1|S2|G|881
*
6OLE|1|S2|C|905
6OLE|1|S2|U|906
6OLE|1|S2|G|907

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L19

Chain SL

40S ribosomal protein S11