IL_6OLE_139

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCACG*CCGUCG

Length

11 nucleotides

Bulged bases

6OLE|1|t|U|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLE_139 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3268

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6OLE|1|t|C|1068
6OLE|1|t|C|1069
6OLE|1|t|A|1070
6OLE|1|t|C|1071
6OLE|1|t|G|1072
*
6OLE|1|t|C|1189
6OLE|1|t|C|1190
6OLE|1|t|G|1191
6OLE|1|t|U|1192
6OLE|1|t|C|1193
6OLE|1|t|G|1194

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L7

Chain U

60S ribosomal protein L21