IL_6OLE_225
3D structure
- PDB id
- 6OLE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUG*UUUUU
- Length
- 8 nucleotides
- Bulged bases
- 6OLE|1|t|U|4399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLE_225 not in the Motif Atlas
- Geometric match to IL_5TBW_105
- Geometric discrepancy: 0.0992
- The information below is about IL_5TBW_105
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6OLE|1|t|G|4367
6OLE|1|t|U|4368
6OLE|1|t|G|4369
*
6OLE|1|t|U|4397
6OLE|1|t|U|4398
6OLE|1|t|U|4399
6OLE|1|t|U|4400
6OLE|1|t|U|4401
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain K
- 60S ribosomal protein L10
- Chain u
- Transfer RNA; tRNA
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