IL_6OLE_284

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6OLE|1|t|A|1983

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLE_284 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2392

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6OLE|1|t|G|1982
6OLE|1|t|A|1983
6OLE|1|t|G|1984
6OLE|1|t|U|1985
6OLE|1|t|G|1986
*
6OLE|1|t|C|1995
6OLE|1|t|U|1996
6OLE|1|t|C|1997

Current chains

Chain t

28S ribosomal RNA

Nearby chains