IL_6OLF_015

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

U(A2M)U*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_015 not in the Motif Atlas

Geometric match to IL_4KR9_002

Geometric discrepancy: 0.1666

The information below is about IL_4KR9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6OLF|1|S2|U|26
6OLF|1|S2|A2M|27
6OLF|1|S2|U|28
*
6OLF|1|S2|G|646
6OLF|1|S2|U|647
6OLF|1|S2|A|648

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23