IL_6OLF_038
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAG*CGAGGAUC
- Length
- 11 nucleotides
- Bulged bases
- 6OLF|1|S2|G|588, 6OLF|1|S2|G|589, 6OLF|1|S2|U|591
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLF_038 not in the Motif Atlas
- Geometric match to IL_7RQB_082
- Geometric discrepancy: 0.3071
- The information below is about IL_7RQB_082
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.7
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6OLF|1|S2|G|563
6OLF|1|S2|A|564
6OLF|1|S2|G|565
*
6OLF|1|S2|C|585
6OLF|1|S2|G|586
6OLF|1|S2|A|587
6OLF|1|S2|G|588
6OLF|1|S2|G|589
6OLF|1|S2|A|590
6OLF|1|S2|U|591
6OLF|1|S2|C|592
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- 40S ribosomal protein S30
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