IL_6OLF_080

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGG*C(5MC)G

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_080 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.3108

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6OLF|1|S2|C|1363
6OLF|1|S2|U|1364
6OLF|1|S2|G|1365
6OLF|1|S2|G|1366
*
6OLF|1|S2|C|1373
6OLF|1|S2|5MC|1374
6OLF|1|S2|G|1375

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SR

40S ribosomal protein S17

Chain Sa

40S ribosomal protein S26