IL_6OLF_090
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- G(OMC)CC*G(UR3)A(6MZ)C
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, UR3, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLF_090 not in the Motif Atlas
- Homologous match to IL_8C3A_471
- Geometric discrepancy: 0.322
- The information below is about IL_8C3A_471
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6OLF|1|S2|G|1702
6OLF|1|S2|OMC|1703
6OLF|1|S2|C|1704
6OLF|1|S2|C|1705
*
6OLF|1|S2|G|1829
6OLF|1|S2|UR3|1830
6OLF|1|S2|A|1831
6OLF|1|S2|6MZ|1832
6OLF|1|S2|C|1833
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain o
- 60S ribosomal protein L41
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
- Chain v
- Transfer RNA; tRNA
- Chain w
- mRNA
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