IL_6OLF_092
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CG(OMC)U*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLF_092 not in the Motif Atlas
- Geometric match to IL_6AZ4_001
- Geometric discrepancy: 0.3983
- The information below is about IL_6AZ4_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69145.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6OLF|1|S2|C|1708
6OLF|1|S2|G|1709
6OLF|1|S2|OMC|1710
6OLF|1|S2|U|1711
*
6OLF|1|S2|A|1822
6OLF|1|S2|A|1823
6OLF|1|S2|A|1824
6OLF|1|S2|A|1825
6OLF|1|S2|G|1826
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
- Chain o
- 60S ribosomal protein L41
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
- Chain u
- Transfer RNA; tRNA
- Chain w
- mRNA
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