IL_6OLF_113

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGA*UUUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_113 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.318

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6OLF|1|t|G|458
6OLF|1|t|G|459
6OLF|1|t|A|460
*
6OLF|1|t|U|682
6OLF|1|t|U|683
6OLF|1|t|U|684
6OLF|1|t|C|685

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L6

Chain r

60S ribosomal protein L28