IL_6OLF_145

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_145 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.2294

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6OLF|1|t|C|1456
6OLF|1|t|G|1457
6OLF|1|t|C|1458
*
6OLF|1|t|G|1471
6OLF|1|t|G|1472

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L13

Chain b

60S ribosomal protein L27a

Chain c

60S ribosomal protein L29

Chain p

60S ribosomal protein L36a