3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGC*GGUG
Length
7 nucleotides
Bulged bases
6OLF|1|t|G|2322
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OLF_173 not in the Motif Atlas
Homologous match to IL_8C3A_061
Geometric discrepancy: 0.2684
The information below is about IL_8C3A_061
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_73554.3
Basepair signature
cWW-cWS-cWW
Number of instances in this motif group
10

Unit IDs

6OLF|1|t|C|2269
6OLF|1|t|G|2270
6OLF|1|t|C|2271
*
6OLF|1|t|G|2321
6OLF|1|t|G|2322
6OLF|1|t|U|2323
6OLF|1|t|G|2324

Current chains

Chain t
28S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L4
Chain D
5.8S ribosomal RNA; 5.8S rRNA
Chain b
60S ribosomal protein L27a
Chain f
60S ribosomal protein L32
Chain r
60S ribosomal protein L28

Coloring options:


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