3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAGUGG*CGC
Length
9 nucleotides
Bulged bases
6OLF|1|t|G|2525
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OLF_182 not in the Motif Atlas
Geometric match to IL_4RUM_001
Geometric discrepancy: 0.2718
The information below is about IL_4RUM_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_57744.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
22

Unit IDs

6OLF|1|t|G|2521
6OLF|1|t|A|2522
6OLF|1|t|G|2523
6OLF|1|t|U|2524
6OLF|1|t|G|2525
6OLF|1|t|G|2526
*
6OLF|1|t|C|2751
6OLF|1|t|G|2752
6OLF|1|t|C|2753

Current chains

Chain t
28S ribosomal RNA

Nearby chains

Chain D
5.8S ribosomal RNA; 5.8S rRNA
Chain l
60S ribosomal protein L38

Coloring options:


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